A Prediction Model for Membrane Proteins Using Moments Based Features.

نویسندگان

  • Ahmad Hassan Butt
  • Sher Afzal Khan
  • Hamza Jamil
  • Nouman Rasool
  • Yaser Daanial Khan
چکیده

The most expedient unit of the human body is its cell. Encapsulated within the cell are many infinitesimal entities and molecules which are protected by a cell membrane. The proteins that are associated with this lipid based bilayer cell membrane are known as membrane proteins and are considered to play a significant role. These membrane proteins exhibit their effect in cellular activities inside and outside of the cell. According to the scientists in pharmaceutical organizations, these membrane proteins perform key task in drug interactions. In this study, a technique is presented that is based on various computationally intelligent methods used for the prediction of membrane protein without the experimental use of mass spectrometry. Statistical moments were used to extract features and furthermore a Multilayer Neural Network was trained using backpropagation for the prediction of membrane proteins. Results show that the proposed technique performs better than existing methodologies.

برای دانلود رایگان متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

In Silico and in Vitroinvestigations on cry4aand cry11atoxins of Bacillus thuringiensis var Israelensis

In the present study we attempted to correlate the structure and function of the cry11a (72 kDa) and cry4a (135 kDa) proteins of Bacillus thuringiensis var israelensis. Homology modeling and secondary structure predictions were done to locate most probable regions for finding helices or strands in these proteins. The JPRED (JPRED consensus secondary structure prediction server) secondary struct...

متن کامل

A model for modified electrode with carbon nanotube composites using percolation theory in fractal space

We introduce a model for prediction the behavior of electrodes which modified withcarbon nanotubes in a polymer medium. These kinds of polymer composites aredeveloped in recent years, and experimental data for its percolation threshold isavailable. We construct a model based on percolation theory and fractal dimensionsand using experimental percolation threshold for calculating the moments of c...

متن کامل

Prediction of RO Membrane Performances by Use of Adaptive Network-Based Fuzzy Interference Systems

This study aims to develop an Adaptive Network-based Fuzzy Inference System technique (ANFIS) and using the parameters of a complex mathematical model in the RO membrane performances. The ANFIS was constructed by using a subtractive clustering method to generate initial fuzzy inference systems. The model trained by 70% of the data set and then its validity is examined by remained 30% data set. ...

متن کامل

Prediction of Protein Sub-Mitochondria Locations Using Protein Interaction Networks

Background: Prediction of the protein localization is among the most important issues in the bioinformatics that is used for the prediction of the proteins in the cells and organelles such as mitochondria. In this study, several machine learning algorithms are applied for the prediction of the intracellular protein locations. These algorithms use the features extracted from pro...

متن کامل

Arabidopsis leaf plasma membrane proteome using a gel free method: Focus on receptor–like kinases

The hydrophobic proteins of plant plasma membrane still remain largely unknown.  For example in the Arabidopsis genome, receptor-like kinases (RLKs) are plasma membrane proteins, functioning as the primary receptors in the signaling of stress conditions, hormones and the presence of pathogens form a diverse family of over 610 genes. A limited number of these proteins have appeard in pr...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

عنوان ژورنال:
  • BioMed research international

دوره 2016  شماره 

صفحات  -

تاریخ انتشار 2016